PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr041312.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 168aa    MW: 18179.7 Da    PI: 5.2749
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr041312.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.15.5e-072381755
                 HHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
          HLH 17 NsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                 +  f++L +l+P++   +s+   s  + L  Av+YIk+Lq
  Pbr041312.1  2 KALFSKLNSLVPHQ---RSGEaASLPDQLDDAVNYIKQLQ 38
                 6679*********7...56666*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.969137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-7152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-8160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MKALFSKLNS LVPHQRSGEA ASLPDQLDDA VNYIKQLQTN LEKMREKKDR LMGGIEKSTH  60
CNAGFGRCAG PITGGSPLVE IRETGSALEI QMITGLEYQF MFNESICVLH EEGADVVNAG  120
FSVVEDTVFH TIHSKIEELA PGCAAARISE KLNKKFVNDQ ADALGSI*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009346720.11e-122PREDICTED: uncharacterized protein LOC103938438
TrEMBLM5WPJ83e-72M5WPJ8_PRUPE; Uncharacterized protein
STRINGPOPTR_0011s05320.11e-63(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-39bHLH family protein